Access the collection of accepted papers on PeerJ.


Accepted Full Papers

Enumerating common molecular substructures
 Martin S. Engler, Mohammed El-Kebir, Alan E. Mark, Daan P. Geerke and Gunnar W. Klau.

On the Efficiency of the Genetic Code after Frameshift Mutations
 Regine Geyer and Amir Madany Mamlouk.

Hortense: Horizontal gene transfer detection directly from proteomic MS/MS data
 Kathrin Trappe, Ben Wulf, Joerg Doellinger, Sven Halbedel, Thilo Muth and Bernhard Renard.

Predicting Comorbidities of Epilepsy Patients Using Big Data from Electronic Health Records Combined With Biomedical Knowledge
 Thomas Gerlach and Holger Fröhlich.


Highlight Presentations:

Origin of a folded protein from an intrinsically disordered ancestral peptide
 Hongbo Zhu, Edgardo Sepulveda, Marcus D. Hartmann, Manjunatha Kogenaru, Jörg Martin and Andrei N. Lupas.

Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction
 Florian Schmidt, Nina Gasparoni, Gilles Gasparoni, Kathrin Gianmoena, Cristina Cadenas, Julia Polansky, Peter Ebert, Karl Nordström, Matthias Barann, Anupam Sinha, Sebastian Fröhler, Jieyi Xiong, Azim Deghani Amirabad, Fatemeh Behjati Ardakani, Barbara Hutter, Gideon Zipprich, Bärbel Felder, Jürgen Eils, Benedikt Brors, Wei Chen, Jan Hengstler, Alf Hamann, Thomas Lengauer, Philip Rosenstiel, Jörn Walter and Marcel Schulz.

De Novo Viral Quasispecies Assembly using Overlap Graphs
 Jasmijn Baaijens, Zine El Aabidine Amal, Eric Rivals and Alexander Schoenhuth.

Rapid genome-wide recruitment of RNA Polymerase II drives transcription, splicing, and translation during T cell responses
 Kathrin Davari, Johannes Lichti, Christian Gallus, Franziska Greulich, N. Henriette Uhlenhaut, Matthias Heinig, Caroline C. Friedel and Elke Glasmacher.

Speeding Up Approximate String Searching in Indices: EPR-Dictionaries and Optimal Search Schemes
 Christopher Pockrandt, Marcel Ehrhardt and Knut Reinert.

DeepBlueR: Large-scale epigenomic analysis in R
 Markus List, Felipe Albrecht, Christoph Bock and Thomas Lengauer.

Fast and Accurate Phylogeny Reconstruction using Filtered Spaced-Word Matches
 Chris-Andre Leimeister, Salma Sohrabi-Jahromi and Burkhard Morgenstern.

InMoDe: tools for learning and visualizing intra-motif dependencies of DNA binding sites
 Ralf Eggeling, Ivo Grosse and Jan Grau.